Scientific Open Source Software
The Pattern Institute maintains a curated listing of scientific open source software developed and supported by its research community. This collection includes R packages, data packages and reproducible compendia designed to advance computational biology, genomics, and data science. Each software entry is openly available, documented, and actively maintained to promote reproducibility, collaboration, and innovation in scientific research.
R Packages
A collection of R packages maintained by PI’s community.
quincunx
R
Human Genetics
Polygenic Risk Score
PGS Catalog
grantham
R
Grantham distance
missense mutations
evolution
mgi.report.reader
R
Genetics
Mouse
Mouse Genome Informatics (MGI)
Gene Nomenclature
gwasrapidd
R
Human Genetics
Genome-wide Association Study
GWAS Catalog
hgnc
R
HGNC
Human Genetics
fluents
R
ODE
dynamical system
grind
agvgd
R
AGVGD
missense substitutions
No matching items
Data Packages
A collection of nifty data packages.
sdtm.terminology
R
CDISC
SDTM
Clinical data
CAOP.RAA.2024
R
data
Azores
Direção-Geral do Território
CAOP
Região Autónoma dos Açores
sf
spatial analysis
azores.seamounts
R
data
Azores
seamount
atlantic ocean
azores.bathymetry
R
data
Azores
bathymetry
atlantic ocean
No matching items
Compendium Packages
R packages supporting reproducibility for publications.
No matching items
PCR Data Packages
A collection of data packages to support the development and assessment of qPCR model fitting.
No matching items